/EXTERNAL CREST/methylation/K006456_1_lane_gembs

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SAMPLE K006456_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25812289 18671056 72.33 %
NonRefCpG 325133 133034 40.92 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006456_1_lane_gembs_coverage_refCpG.png ./IMG//K006456_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006456_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006456_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006456_1_lane_gembs_quality_refcpg.png ./IMG//K006456_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006456_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6934063 13.74 % 5262768 12.92 % 133234 22.54 % 35069 10.32 %
Intermediate (0.3-0.7) 9980402 19.78 % 7094155 17.41 % 136387 23.07 % 66093 19.44 %
Methylated (0.7-1) 33554676 66.49 % 28383834 69.67 % 321467 54.39 % 238742 70.24 %
Median Methylation 0.820 0.830 0.740 0.830