/EXTERNAL CREST/mapping_coverage/K006458_1_lane_gembs
BACK
SAMPLE K006458_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2449686485 |
100% |
178488056707 |
100% |
| Mapped |
2449686485 |
100.00 % |
178488056707 |
100.00 % |
| Passed |
1266780064 |
51.71 % |
143792708307 |
80.56 % |
| NotPassed |
1182906421 |
48.29 % |
34695348400 |
19.44 % |
| |
|
|
|
|
| LowMAPQ |
346953484 |
14.16 % |
34695348400 |
19.44 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
835952937 |
34.12 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
63574744200 |
100% |
| Passed |
57521589478 |
90.48 % |
| Trimmed |
2820261427 |
4.44 % |
| Clipped |
2530383508 |
3.98 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
702509787 |
1.11 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |