/EXTERNAL CREST/methylation/K006458_1_lane_gembs

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SAMPLE K006458_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25837054 18245506 70.62 %
NonRefCpG 324817 128665 39.61 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006458_1_lane_gembs_coverage_refCpG.png ./IMG//K006458_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006458_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006458_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006458_1_lane_gembs_quality_refcpg.png ./IMG//K006458_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006458_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7348368 14.56 % 5496891 13.71 % 144106 24.15 % 37780 11.28 %
Intermediate (0.3-0.7) 10714468 21.24 % 7503810 18.71 % 144767 24.27 % 70587 21.07 %
Methylated (0.7-1) 32392961 64.20 % 27103789 67.58 % 307730 51.58 % 226568 67.65 %
Median Methylation 0.800 0.820 0.710 0.820