{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 94382484, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 70150894, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 74.33, 
            "paired": 94382484, 
            "paired_qc_failed": 0, 
            "read1": 47191242, 
            "read1_qc_failed": 0, 
            "read2": 47191242, 
            "read2_qc_failed": 0, 
            "paired_properly": 68885675, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 72.99, 
            "with_itself": 69311879, 
            "with_itself_qc_failed": 0, 
            "singletons": 839015, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.89, 
            "diff_chroms": 150105, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 192478142, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 185401012, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.32, 
            "paired": 192478142, 
            "paired_qc_failed": 0, 
            "read1": 96239071, 
            "read1_qc_failed": 0, 
            "read2": 96239071, 
            "read2_qc_failed": 0, 
            "paired_properly": 183168625, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.16, 
            "with_itself": 184250860, 
            "with_itself_qc_failed": 0, 
            "singletons": 1150152, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.6, 
            "diff_chroms": 298242, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 30134678, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 231880, 
            "paired_opt_dupes": 1989, 
            "dupes_pct": 0.007695
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 78445518, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 555253, 
            "paired_opt_dupes": 2096, 
            "dupes_pct": 0.007078
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 30132864, 
            "distinct_read_pairs": 29900994, 
            "one_read_pair": 29670954, 
            "two_read_pair": 228229, 
            "NRF": 0.992305, 
            "PBC1": 0.992307, 
            "PBC2": 130.005188
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 78441301, 
            "distinct_read_pairs": 77886084, 
            "one_read_pair": 77336819, 
            "two_read_pair": 543707, 
            "NRF": 0.992922, 
            "PBC1": 0.992948, 
            "PBC2": 142.239881
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 59805596, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 59805596, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 59805596, 
            "paired_qc_failed": 0, 
            "read1": 29902798, 
            "read1_qc_failed": 0, 
            "read2": 29902798, 
            "read2_qc_failed": 0, 
            "paired_properly": 59805596, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 59805596, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 155780530, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 155780530, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 155780530, 
            "paired_qc_failed": 0, 
            "read1": 77890265, 
            "read1_qc_failed": 0, 
            "read2": 77890265, 
            "read2_qc_failed": 0, 
            "paired_properly": 155780530, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 155780530, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 56512, 
        "Np": 0, 
        "N_opt": 56512, 
        "N_consv": 56512, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 120, 
            "corr_est_frag_len": 0.183446025960097, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2167175, 
            "argmin_corr": 1500, 
            "min_corr": 0.1723514, 
            "NSC": 1.064372, 
            "RSC": 0.2500695
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.14522614198
        }, 
        "rep1-pr1": {
            "FRiP": 0.148809200122
        }, 
        "rep1-pr2": {
            "FRiP": 0.148886956735
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.0803935648427
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.266076160136, 
            "auc": 0.494745288363, 
            "ch_div": 0.118022915246, 
            "elbow_pt": 4.73220801101e-311, 
            "jsd": 0.591929882785, 
            "syn_auc": 0.50794550219, 
            "syn_elbow_pt": 0.111498416166, 
            "syn_jsd": 0.296356842197
        }
    ]
}
