/cemt/mapping_coverage/A77947_1_lane_gembs
BACK
SAMPLE A77947_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1006402602 |
100% |
133362247559 |
100% |
| Mapped |
993207102 |
98.69 % |
131382922559 |
98.52 % |
| Passed |
780858735 |
77.59 % |
99530667509 |
74.63 % |
| NotPassed |
212348367 |
21.10 % |
31852255050 |
23.88 % |
| |
|
|
|
|
| LowMAPQ |
105405422 |
10.47 % |
15810813300 |
11.86 % |
| MateUnmapped |
13195500 |
1.31 % |
1979325000 |
1.48 % |
| Duplicate |
94705900 |
9.41 % |
14205885000 |
10.65 % |
| BadOrientation |
38 |
0.00 % |
5700 |
0.00 % |
| LargeInsertSize |
6312 |
0.00 % |
946800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12230695 |
1.22 % |
1834604250 |
1.38 % |
| Unmapped |
13195500 |
1.31 % |
1979325000 |
1.48 % |
Base Level Counts
| Bases |
# |
% |
| Total |
117118569150 |
100% |
| Passed |
92549734743 |
79.02 % |
| Trimmed |
3363457215 |
2.87 % |
| Clipped |
311072469 |
0.27 % |
| Overlapping |
17276829172 |
14.75 % |
| LowQuality |
3617475551 |
3.09 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |