/cemt/methylation/A77947_1_lane_gembs

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SAMPLE A77947_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27224890 23600997 86.69 %
NonRefCpG 272463 204564 75.08 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A77947_1_lane_gembs_coverage_refCpG.png ./IMG//A77947_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A77947_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A77947_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A77947_1_lane_gembs_quality_refcpg.png ./IMG//A77947_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A77947_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4529161 8.42 % 2713474 5.57 % 38785 7.48 % 11744 2.76 %
Intermediate (0.3-0.7) 5748647 10.69 % 4352189 8.94 % 64069 12.35 % 35768 8.39 %
Methylated (0.7-1) 43486236 80.88 % 41637161 85.49 % 415750 80.17 % 378779 88.85 %
Median Methylation 0.900 0.910 0.900 0.920