/CEMT/mapping_coverage/A77948_3_lane_gembs
BACK
SAMPLE A77948_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1597522723 |
100% |
207335020259 |
100% |
| Mapped |
1582224477 |
99.04 % |
205040283359 |
98.89 % |
| Passed |
1022319427 |
63.99 % |
121054525859 |
58.39 % |
| NotPassed |
559905050 |
35.05 % |
83985757500 |
40.51 % |
| |
|
|
|
|
| LowMAPQ |
226502974 |
14.18 % |
33975446100 |
16.39 % |
| MateUnmapped |
15298246 |
0.96 % |
2294736900 |
1.11 % |
| Duplicate |
297373354 |
18.61 % |
44606003100 |
21.51 % |
| BadOrientation |
246 |
0.00 % |
36900 |
0.00 % |
| LargeInsertSize |
22110 |
0.00 % |
3316500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
36006366 |
2.25 % |
5400954900 |
2.60 % |
| Unmapped |
15298246 |
0.96 % |
2294736900 |
1.11 % |
Base Level Counts
| Bases |
# |
% |
| Total |
153316036500 |
100% |
| Passed |
113256681933 |
73.87 % |
| Trimmed |
4344531558 |
2.83 % |
| Clipped |
345126986 |
0.23 % |
| Overlapping |
31916383655 |
20.82 % |
| LowQuality |
3453312368 |
2.25 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |