/cemt/A77949_1_lane_gembs

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SAMPLE A77949_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1228159706 100.00 % 614079853 100.00 % 614079853 100.00 %
General Reads 1017240064 82.83 % 512826719 83.51 % 504413345 82.14 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 6763072 0.55 % 3403014 0.55 % 3360058 0.55 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 204156570 16.62 % 97850120 15.93 % 106306450 17.31 %
Bisulfite_reads C2T 521406617 42.45 % 262797674 42.80 % 258608943 42.11 %
Bisulfite_reads G2A 502596519 40.92 % 253432059 41.27 % 249164460 40.58 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 449893932
Average Unique 73.26 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 69046308695 37.23 % 28811940264 31.07 % 40234368431 43.39 %
Base Counts Overall C 22870351562 12.33 % 3799916935 4.10 % 19070434627 20.57 %
Base Counts Overall G 22551199013 12.16 % 18547443994 20.00 % 4003755019 4.32 %
Base Counts Overall T 69734239714 37.60 % 40940970092 44.15 % 28793269622 31.05 %
Base Counts Overall N 1250016622 0.67 % 625786518 0.67 % 624230104 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.987800880297949
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 494702284



Mapping Quality

Mapping Quality Histogram
A77949_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A77949_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
H5235CCXY_3_1
HGJ2KCCXY_7_1