/cemt/A77949_1_lane_gembs/HGJ2KCCXY_7_1

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SAMPLE A77949_1_lane_gembs LANE HGJ2KCCXY_7_1

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 206651524 100.00 % 103325762 100.00 % 103325762 100.00 %
General Reads 201838423 97.67 % 102034356 98.75 % 99804067 96.59 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1353925 0.66 % 682665 0.66 % 671260 0.65 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3459176 1.67 % 608741 0.59 % 2850435 2.76 %
Bisulfite_reads C2T 103442178 50.06 % 52274531 50.59 % 51167647 49.52 %
Bisulfite_reads G2A 99750170 48.27 % 50442490 48.82 % 49307680 47.72 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 89110459
Average Unique 86.24 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12210569630 39.13 % 4916111818 31.51 % 7294457812 46.75 %
Base Counts Overall C 3289918653 10.54 % 124398114 0.80 % 3165520539 20.29 %
Base Counts Overall G 3150953223 10.10 % 3010729732 19.30 % 140223491 0.90 %
Base Counts Overall T 12345321769 39.56 % 7447229077 47.73 % 4898092692 31.39 %
Base Counts Overall N 207616849 0.67 % 103721321 0.66 % 103895528 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9958290341598491
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 97970722



Mapping Quality

Mapping Quality Histogram
HGJ2KCCXY_7_1.mapq.png



Read Length

Read Length Reads
150 103325762
150 103325762



Insert Size Plot

Insert Size Histogram
HGJ2KCCXY_7_1.isize.png