/cemt/mapping_coverage/A77949_1_lane_gembs
BACK
SAMPLE A77949_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
917784310 |
100% |
123689840870 |
100% |
| Mapped |
906311274 |
98.75 % |
121968885470 |
98.61 % |
| Passed |
697554586 |
76.00 % |
90655382270 |
73.29 % |
| NotPassed |
208756688 |
22.75 % |
31313503200 |
25.32 % |
| |
|
|
|
|
| LowMAPQ |
92145172 |
10.04 % |
13821775800 |
11.17 % |
| MateUnmapped |
11473036 |
1.25 % |
1720955400 |
1.39 % |
| Duplicate |
99529622 |
10.84 % |
14929443300 |
12.07 % |
| BadOrientation |
42 |
0.00 % |
6300 |
0.00 % |
| LargeInsertSize |
8576 |
0.00 % |
1286400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17073276 |
1.86 % |
2560991400 |
2.07 % |
| Unmapped |
11473036 |
1.25 % |
1720955400 |
1.39 % |
Base Level Counts
| Bases |
# |
% |
| Total |
104620790250 |
100% |
| Passed |
84325644180 |
80.60 % |
| Trimmed |
3067586966 |
2.93 % |
| Clipped |
278005896 |
0.27 % |
| Overlapping |
13687402084 |
13.08 % |
| LowQuality |
3262151124 |
3.12 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |