/cemt/methylation/A77949_1_lane_gembs

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SAMPLE A77949_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27142861 21615607 79.64 %
NonRefCpG 298195 208954 70.07 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A77949_1_lane_gembs_coverage_refCpG.png ./IMG//A77949_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A77949_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A77949_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A77949_1_lane_gembs_quality_refcpg.png ./IMG//A77949_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A77949_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4850181 9.07 % 2284858 5.00 % 49583 8.73 % 14292 3.19 %
Intermediate (0.3-0.7) 11144481 20.85 % 8514088 18.62 % 124864 21.97 % 83545 18.67 %
Methylated (0.7-1) 37468224 70.08 % 34924866 76.38 % 393817 69.30 % 349595 78.13 %
Median Methylation 0.830 0.850 0.820 0.860