{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 146898058, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 145439002, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 99.01, 
            "paired": 146898058, 
            "paired_qc_failed": 0, 
            "read1": 73449029, 
            "read1_qc_failed": 0, 
            "read2": 73449029, 
            "read2_qc_failed": 0, 
            "paired_properly": 144146925, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 98.13, 
            "with_itself": 144441561, 
            "with_itself_qc_failed": 0, 
            "singletons": 997441, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.68, 
            "diff_chroms": 53712, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 78085830, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 76610347, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.11, 
            "paired": 78085830, 
            "paired_qc_failed": 0, 
            "read1": 39042915, 
            "read1_qc_failed": 0, 
            "read2": 39042915, 
            "read2_qc_failed": 0, 
            "paired_properly": 74378590, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.25, 
            "with_itself": 75950585, 
            "with_itself_qc_failed": 0, 
            "singletons": 659762, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.84, 
            "diff_chroms": 90080, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 66870574, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 797202, 
            "paired_opt_dupes": 3486, 
            "dupes_pct": 0.011922
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 32826215, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 205201, 
            "paired_opt_dupes": 1517, 
            "dupes_pct": 0.006251
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 66826892, 
            "distinct_read_pairs": 66036154, 
            "one_read_pair": 65256173, 
            "two_read_pair": 769796, 
            "NRF": 0.988167, 
            "PBC1": 0.988189, 
            "PBC2": 84.770735
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 32750640, 
            "distinct_read_pairs": 32567543, 
            "one_read_pair": 32390569, 
            "two_read_pair": 174492, 
            "NRF": 0.994409, 
            "PBC1": 0.994566, 
            "PBC2": 185.627817
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 132146744, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 132146744, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 132146744, 
            "paired_qc_failed": 0, 
            "read1": 66073372, 
            "read1_qc_failed": 0, 
            "read2": 66073372, 
            "read2_qc_failed": 0, 
            "paired_properly": 132146744, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 132146744, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 65242028, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 65242028, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 65242028, 
            "paired_qc_failed": 0, 
            "read1": 32621014, 
            "read1_qc_failed": 0, 
            "read2": 32621014, 
            "read2_qc_failed": 0, 
            "paired_properly": 65242028, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 65242028, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 197325, 
        "Np": 0, 
        "N_opt": 197325, 
        "N_consv": 197325, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 150, 
            "corr_est_frag_len": 0.175894185991596, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1743532, 
            "argmin_corr": 1500, 
            "min_corr": 0.1700685, 
            "NSC": 1.034255, 
            "RSC": 1.359653
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.250675043088
        }, 
        "rep1-pr1": {
            "FRiP": 0.266577933458
        }, 
        "rep1-pr2": {
            "FRiP": 0.266712034744
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.217886641038
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.256105148215, 
            "auc": 0.496464252039, 
            "ch_div": 0.103018998439, 
            "elbow_pt": 0.0, 
            "jsd": 0.666196853652, 
            "syn_auc": 0.503574006266, 
            "syn_elbow_pt": 0.15111224481, 
            "syn_jsd": 0.319182599686
        }
    ]
}
