/cemt/A77950_1_lane_gembs

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SAMPLE A77950_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1097790242 100.00 % 548895121 100.00 % 548895121 100.00 %
General Reads 960741587 87.52 % 484960016 88.35 % 475781571 86.68 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 6078572 0.55 % 3059938 0.56 % 3018634 0.55 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 130970083 11.93 % 60875167 11.09 % 70094916 12.77 %
Bisulfite_reads C2T 491242196 44.75 % 247839637 45.15 % 243402559 44.34 %
Bisulfite_reads G2A 475577963 43.32 % 240180317 43.76 % 235397646 42.89 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 423781668
Average Unique 77.21 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 62573399488 37.75 % 26864709187 32.41 % 35708690301 43.08 %
Base Counts Overall C 19566514098 11.80 % 2581894696 3.12 % 16984619402 20.49 %
Base Counts Overall G 19227851100 11.60 % 16491481571 19.90 % 2736369529 3.30 %
Base Counts Overall T 63277734766 38.17 % 36384590422 43.90 % 26893144344 32.45 %
Base Counts Overall N 1120827090 0.68 % 560487395 0.68 % 560339695 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9904140336461519
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 467804480



Mapping Quality

Mapping Quality Histogram
A77950_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A77950_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
H5235CCXY_4_1
HGJ2KCCXY_8_1