/cemt/mapping_coverage/A77950_1_lane_gembs
BACK
SAMPLE A77950_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
885808077 |
100% |
120559554985 |
100% |
| Mapped |
874262099 |
98.70 % |
118827658285 |
98.56 % |
| Passed |
694947502 |
78.45 % |
91930468735 |
76.25 % |
| NotPassed |
179314597 |
20.24 % |
26897189550 |
22.31 % |
| |
|
|
|
|
| LowMAPQ |
90993080 |
10.27 % |
13648962000 |
11.32 % |
| MateUnmapped |
11545978 |
1.30 % |
1731896700 |
1.44 % |
| Duplicate |
74981308 |
8.46 % |
11247196200 |
9.33 % |
| BadOrientation |
36 |
0.00 % |
5400 |
0.00 % |
| LargeInsertSize |
33820 |
0.00 % |
5073000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13306353 |
1.50 % |
1995952950 |
1.66 % |
| Unmapped |
11545978 |
1.30 % |
1731896700 |
1.44 % |
Base Level Counts
| Bases |
# |
% |
| Total |
104228269800 |
100% |
| Passed |
85073676860 |
81.62 % |
| Trimmed |
3085090821 |
2.96 % |
| Clipped |
294511814 |
0.28 % |
| Overlapping |
12003289251 |
11.52 % |
| LowQuality |
3771701054 |
3.62 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |