/cemt/methylation/A77950_1_lane_gembs

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SAMPLE A77950_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27025745 20846889 77.14 %
NonRefCpG 282384 181903 64.42 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A77950_1_lane_gembs_coverage_refCpG.png ./IMG//A77950_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A77950_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A77950_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A77950_1_lane_gembs_quality_refcpg.png ./IMG//A77950_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A77950_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4308533 8.15 % 1599503 3.65 % 57742 10.84 % 13949 3.53 %
Intermediate (0.3-0.7) 9354026 17.69 % 6335394 14.46 % 98969 18.59 % 54680 13.84 %
Methylated (0.7-1) 39228654 74.17 % 35892599 81.90 % 375731 70.57 % 326502 82.63 %
Median Methylation 0.860 0.890 0.850 0.890