/cemt/mapping_coverage/A77951_1_lane_gembs
BACK
SAMPLE A77951_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
946848022 |
100% |
125699215596 |
100% |
| Mapped |
934991266 |
98.75 % |
123920702196 |
98.59 % |
| Passed |
720508602 |
76.10 % |
91748302596 |
72.99 % |
| NotPassed |
214482664 |
22.65 % |
32172399600 |
25.59 % |
| |
|
|
|
|
| LowMAPQ |
103379572 |
10.92 % |
15506935800 |
12.34 % |
| MateUnmapped |
11856756 |
1.25 % |
1778513400 |
1.41 % |
| Duplicate |
97045577 |
10.25 % |
14556836550 |
11.58 % |
| BadOrientation |
32 |
0.00 % |
4800 |
0.00 % |
| LargeInsertSize |
8554 |
0.00 % |
1283100 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
14048929 |
1.48 % |
2107339350 |
1.68 % |
| Unmapped |
11856756 |
1.25 % |
1778513400 |
1.41 % |
Base Level Counts
| Bases |
# |
% |
| Total |
108066349800 |
100% |
| Passed |
85492904454 |
79.11 % |
| Trimmed |
3113916160 |
2.88 % |
| Clipped |
275599935 |
0.26 % |
| Overlapping |
16042447269 |
14.84 % |
| LowQuality |
3141481982 |
2.91 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |