/cemt/methylation/A77951_1_lane_gembs

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SAMPLE A77951_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27187534 22335714 82.15 %
NonRefCpG 273982 195981 71.53 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A77951_1_lane_gembs_coverage_refCpG.png ./IMG//A77951_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A77951_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A77951_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A77951_1_lane_gembs_quality_refcpg.png ./IMG//A77951_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A77951_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4437049 8.28 % 2102911 4.50 % 42672 8.20 % 10963 2.65 %
Intermediate (0.3-0.7) 8213880 15.33 % 6072600 13.00 % 85004 16.33 % 50904 12.29 %
Methylated (0.7-1) 40932101 76.39 % 38531808 82.50 % 392723 75.47 % 352391 85.07 %
Median Methylation 0.870 0.890 0.870 0.900