{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 130196004, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 128164035, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.44, 
            "paired": 130196004, 
            "paired_qc_failed": 0, 
            "read1": 65098002, 
            "read1_qc_failed": 0, 
            "read2": 65098002, 
            "read2_qc_failed": 0, 
            "paired_properly": 126871780, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 97.45, 
            "with_itself": 127406285, 
            "with_itself_qc_failed": 0, 
            "singletons": 757750, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.58, 
            "diff_chroms": 66768, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 137672758, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 135411542, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.36, 
            "paired": 137672758, 
            "paired_qc_failed": 0, 
            "read1": 68836379, 
            "read1_qc_failed": 0, 
            "read2": 68836379, 
            "read2_qc_failed": 0, 
            "paired_properly": 130358729, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 94.69, 
            "with_itself": 134702186, 
            "with_itself_qc_failed": 0, 
            "singletons": 709356, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.52, 
            "diff_chroms": 242683, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 54621339, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 880084, 
            "paired_opt_dupes": 3265, 
            "dupes_pct": 0.016112
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 57570655, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 552917, 
            "paired_opt_dupes": 2172, 
            "dupes_pct": 0.009604
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 54537280, 
            "distinct_read_pairs": 53670868, 
            "one_read_pair": 52823261, 
            "two_read_pair": 832584, 
            "NRF": 0.984113, 
            "PBC1": 0.984207, 
            "PBC2": 63.444963
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 57400984, 
            "distinct_read_pairs": 56929490, 
            "one_read_pair": 56475108, 
            "two_read_pair": 445006, 
            "NRF": 0.991786, 
            "PBC1": 0.992019, 
            "PBC2": 126.908644
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 107482510, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 107482510, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 107482510, 
            "paired_qc_failed": 0, 
            "read1": 53741255, 
            "read1_qc_failed": 0, 
            "read2": 53741255, 
            "read2_qc_failed": 0, 
            "paired_properly": 107482510, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 107482510, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 114035476, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 114035476, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 114035476, 
            "paired_qc_failed": 0, 
            "read1": 57017738, 
            "read1_qc_failed": 0, 
            "read2": 57017738, 
            "read2_qc_failed": 0, 
            "paired_properly": 114035476, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 114035476, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 141758, 
        "Np": 0, 
        "N_opt": 141758, 
        "N_consv": 141758, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": -5, 
            "corr_est_frag_len": 0.188077920068584, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1949619, 
            "argmin_corr": 1500, 
            "min_corr": 0.177818, 
            "NSC": 1.057699, 
            "RSC": 0.5984599
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.347566035356
        }, 
        "rep1-pr1": {
            "FRiP": 0.316878019678
        }, 
        "rep1-pr2": {
            "FRiP": 0.317086344976
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.297688028907
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.246335439696, 
            "auc": 0.496075660605, 
            "ch_div": 0.0957759037783, 
            "elbow_pt": 0.0, 
            "jsd": 0.683032840309, 
            "syn_auc": 0.503750805122, 
            "syn_elbow_pt": 0.16670969194, 
            "syn_jsd": 0.342364387739
        }
    ]
}
