/cemt/A77952_1_lane_gembs

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SAMPLE A77952_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1132427066 100.00 % 566213533 100.00 % 566213533 100.00 %
General Reads 993383265 87.72 % 500247244 88.35 % 493136021 87.09 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 7656913 0.68 % 3849356 0.68 % 3807557 0.67 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 131386888 11.60 % 62116933 10.97 % 69269955 12.23 %
Bisulfite_reads C2T 510894493 45.12 % 257203424 45.43 % 253691069 44.80 %
Bisulfite_reads G2A 490145685 43.28 % 246893176 43.60 % 243252509 42.96 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 438215303
Average Unique 77.39 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 64649608642 37.81 % 26537293621 31.04 % 38112315021 44.58 %
Base Counts Overall C 20132097840 11.77 % 2578620340 3.02 % 17553477500 20.53 %
Base Counts Overall G 19700456025 11.52 % 16971220417 19.85 % 2729235608 3.19 %
Base Counts Overall T 65355790237 38.22 % 38833328208 45.42 % 26522462029 31.02 %
Base Counts Overall N 1158534222 0.68 % 577780897 0.68 % 580753325 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9920192526331424
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 485521380



Mapping Quality

Mapping Quality Histogram
A77952_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A77952_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
H5235CCXY_6_1
HGJ2KCCXY_8_1