/cemt/mapping_coverage/A77952_1_lane_gembs
BACK
SAMPLE A77952_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
922870484 |
100% |
120772217016 |
100% |
| Mapped |
912625062 |
98.89 % |
119235403716 |
98.73 % |
| Passed |
731335726 |
79.25 % |
92042003316 |
76.21 % |
| NotPassed |
181289336 |
19.64 % |
27193400400 |
22.52 % |
| |
|
|
|
|
| LowMAPQ |
98914968 |
10.72 % |
14837245200 |
12.29 % |
| MateUnmapped |
10245422 |
1.11 % |
1536813300 |
1.27 % |
| Duplicate |
70595397 |
7.65 % |
10589309550 |
8.77 % |
| BadOrientation |
42 |
0.00 % |
6300 |
0.00 % |
| LargeInsertSize |
6782 |
0.00 % |
1017300 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11772147 |
1.28 % |
1765822050 |
1.46 % |
| Unmapped |
10245422 |
1.11 % |
1536813300 |
1.27 % |
Base Level Counts
| Bases |
# |
% |
| Total |
109691183250 |
100% |
| Passed |
85670660613 |
78.10 % |
| Trimmed |
3140617369 |
2.86 % |
| Clipped |
273683989 |
0.25 % |
| Overlapping |
17375495945 |
15.84 % |
| LowQuality |
3230725334 |
2.95 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |