/cemt/methylation/A77952_1_lane_gembs

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SAMPLE A77952_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27173956 22179024 81.62 %
NonRefCpG 283352 197333 69.64 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A77952_1_lane_gembs_coverage_refCpG.png ./IMG//A77952_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A77952_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A77952_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A77952_1_lane_gembs_quality_refcpg.png ./IMG//A77952_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A77952_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5571485 10.41 % 3088316 6.66 % 57075 10.57 % 20567 4.88 %
Intermediate (0.3-0.7) 7865454 14.70 % 5776294 12.46 % 89298 16.54 % 52702 12.52 %
Methylated (0.7-1) 40072750 74.89 % 37484291 80.87 % 393400 72.88 % 347784 82.60 %
Median Methylation 0.870 0.890 0.860 0.890