/cemt/A77953_1_lane_gembs

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SAMPLE A77953_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1117320918 100.00 % 558660459 100.00 % 558660459 100.00 %
General Reads 998196943 89.34 % 503595979 90.14 % 494600964 88.53 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 7786849 0.70 % 3921228 0.70 % 3865621 0.69 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 111337126 9.96 % 51143252 9.15 % 60193874 10.77 %
Bisulfite_reads C2T 512043519 45.83 % 258230042 46.22 % 253813477 45.43 %
Bisulfite_reads G2A 493940273 44.21 % 249287165 44.62 % 244653108 43.79 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 442265807
Average Unique 79.17 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 64021285300 37.95 % 25767191307 30.55 % 38254093993 45.35 %
Base Counts Overall C 19599750946 11.62 % 2244427866 2.66 % 17355323080 20.57 %
Base Counts Overall G 19096767588 11.32 % 16713838274 19.81 % 2382929314 2.82 %
Base Counts Overall T 64860860331 38.44 % 39064130192 46.31 % 25796730139 30.58 %
Base Counts Overall N 1136794453 0.67 % 568141670 0.67 % 568652783 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9930844539356576
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 487353929



Mapping Quality

Mapping Quality Histogram
A77953_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A77953_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HGJ2KCCXY_8_1
H5235CCXY_7_1