/cemt/methylation/A77953_1_lane_gembs

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SAMPLE A77953_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27089100 23001301 84.91 %
NonRefCpG 279322 203662 72.91 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A77953_1_lane_gembs_coverage_refCpG.png ./IMG//A77953_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A77953_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A77953_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A77953_1_lane_gembs_quality_refcpg.png ./IMG//A77953_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A77953_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5417351 10.13 % 3476119 7.28 % 48992 9.21 % 19538 4.56 %
Intermediate (0.3-0.7) 7709536 14.41 % 6015793 12.60 % 84195 15.83 % 51762 12.07 %
Methylated (0.7-1) 40362829 75.46 % 38268265 80.13 % 398614 74.96 % 357558 83.37 %
Median Methylation 0.880 0.890 0.870 0.900