{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 115992370, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 115494569, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 99.57, 
            "paired": 115992370, 
            "paired_qc_failed": 0, 
            "read1": 57996185, 
            "read1_qc_failed": 0, 
            "read2": 57996185, 
            "read2_qc_failed": 0, 
            "paired_properly": 115184763, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 99.3, 
            "with_itself": 115262511, 
            "with_itself_qc_failed": 0, 
            "singletons": 232058, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.2, 
            "diff_chroms": 29030, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 202360194, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 199280518, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.48, 
            "paired": 202360194, 
            "paired_qc_failed": 0, 
            "read1": 101180097, 
            "read1_qc_failed": 0, 
            "read2": 101180097, 
            "read2_qc_failed": 0, 
            "paired_properly": 196010642, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.86, 
            "with_itself": 198492948, 
            "with_itself_qc_failed": 0, 
            "singletons": 787570, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.39, 
            "diff_chroms": 212946, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 54355441, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 892096, 
            "paired_opt_dupes": 4828, 
            "dupes_pct": 0.016412
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 87251527, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1128860, 
            "paired_opt_dupes": 5289, 
            "dupes_pct": 0.012938
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 54347947, 
            "distinct_read_pairs": 53456157, 
            "one_read_pair": 52590029, 
            "two_read_pair": 842546, 
            "NRF": 0.983591, 
            "PBC1": 0.983797, 
            "PBC2": 62.417991
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 87198629, 
            "distinct_read_pairs": 86085041, 
            "one_read_pair": 85022082, 
            "two_read_pair": 1031715, 
            "NRF": 0.987229, 
            "PBC1": 0.987652, 
            "PBC2": 82.408497
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 106926690, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 106926690, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 106926690, 
            "paired_qc_failed": 0, 
            "read1": 53463345, 
            "read1_qc_failed": 0, 
            "read2": 53463345, 
            "read2_qc_failed": 0, 
            "paired_properly": 106926690, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 106926690, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 172245334, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 172245334, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 172245334, 
            "paired_qc_failed": 0, 
            "read1": 86122667, 
            "read1_qc_failed": 0, 
            "read2": 86122667, 
            "read2_qc_failed": 0, 
            "paired_properly": 172245334, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 172245334, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 233943, 
        "Np": 0, 
        "N_opt": 233943, 
        "N_consv": 233943, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 160, 
            "corr_est_frag_len": 0.196743463077783, 
            "phantom_peak": 55, 
            "corr_phantom_peak": 0.1862577, 
            "argmin_corr": 1500, 
            "min_corr": 0.1737486, 
            "NSC": 1.132345, 
            "RSC": 1.838252
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.631488274934
        }, 
        "rep1-pr1": {
            "FRiP": 0.600410227761
        }, 
        "rep1-pr2": {
            "FRiP": 0.600643334674
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.590103314196
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.137280525002, 
            "auc": 0.496067260174, 
            "ch_div": 0.163779143459, 
            "elbow_pt": 0.0, 
            "jsd": 0.769949100156, 
            "syn_auc": 0.498116395835, 
            "syn_elbow_pt": 0.366294015712, 
            "syn_jsd": 0.517661934379
        }
    ]
}
