/cemt/mapping_coverage/A70096_3_lane_gembs
BACK
SAMPLE A70096_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
951791074 |
100% |
125350125709 |
100% |
| Mapped |
947262022 |
99.52 % |
124670767909 |
99.46 % |
| Passed |
740142397 |
77.76 % |
93602824159 |
74.67 % |
| NotPassed |
207119625 |
21.76 % |
31067943750 |
24.78 % |
| |
|
|
|
|
| LowMAPQ |
105114912 |
11.04 % |
15767236800 |
12.58 % |
| MateUnmapped |
4529052 |
0.48 % |
679357800 |
0.54 % |
| Duplicate |
85428002 |
8.98 % |
12814200300 |
10.22 % |
| BadOrientation |
58 |
0.00 % |
8700 |
0.00 % |
| LargeInsertSize |
8544 |
0.00 % |
1281600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
16568109 |
1.74 % |
2485216350 |
1.98 % |
| Unmapped |
4529052 |
0.48 % |
679357800 |
0.54 % |
Base Level Counts
| Bases |
# |
% |
| Total |
111011911200 |
100% |
| Passed |
87229286307 |
78.58 % |
| Trimmed |
3171030537 |
2.86 % |
| Clipped |
211032094 |
0.19 % |
| Overlapping |
17198054947 |
15.49 % |
| LowQuality |
3202507315 |
2.88 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |