/cemt/methylation/A70096_3_lane_gembs

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SAMPLE A70096_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27183935 24855478 91.43 %
NonRefCpG 261747 205702 78.59 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A70096_3_lane_gembs_coverage_refCpG.png ./IMG//A70096_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A70096_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A70096_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A70096_3_lane_gembs_quality_refcpg.png ./IMG//A70096_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A70096_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4236607 7.86 % 3443579 6.75 % 35227 7.04 % 15380 3.60 %
Intermediate (0.3-0.7) 10268984 19.06 % 9295188 18.22 % 97340 19.45 % 72937 17.05 %
Methylated (0.7-1) 39366164 73.07 % 38275511 75.03 % 367778 73.50 % 339403 79.35 %
Median Methylation 0.850 0.850 0.850 0.870