/cemt/mapping_coverage/A70097_2_lane_gembs
BACK
SAMPLE A70097_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
883701591 |
100% |
117561753278 |
100% |
| Mapped |
879419245 |
99.52 % |
116919401378 |
99.45 % |
| Passed |
698997068 |
79.10 % |
89856074828 |
76.43 % |
| NotPassed |
180422177 |
20.42 % |
27063326550 |
23.02 % |
| |
|
|
|
|
| LowMAPQ |
96264172 |
10.89 % |
14439625800 |
12.28 % |
| MateUnmapped |
4282346 |
0.48 % |
642351900 |
0.55 % |
| Duplicate |
73003275 |
8.26 % |
10950491250 |
9.31 % |
| BadOrientation |
40 |
0.00 % |
6000 |
0.00 % |
| LargeInsertSize |
8830 |
0.00 % |
1324500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11145860 |
1.26 % |
1671879000 |
1.42 % |
| Unmapped |
4282346 |
0.48 % |
642351900 |
0.55 % |
Base Level Counts
| Bases |
# |
% |
| Total |
104839872000 |
100% |
| Passed |
83650509896 |
79.79 % |
| Trimmed |
3020248849 |
2.88 % |
| Clipped |
194082689 |
0.19 % |
| Overlapping |
14789714483 |
14.11 % |
| LowQuality |
3185316083 |
3.04 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |