/cemt/methylation/A70097_2_lane_gembs

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SAMPLE A70097_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27182219 24552123 90.32 %
NonRefCpG 261950 204020 77.89 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A70097_2_lane_gembs_coverage_refCpG.png ./IMG//A70097_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A70097_2_lane_gembs_coverage_nonRefCpG.png ./IMG//A70097_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A70097_2_lane_gembs_quality_refcpg.png ./IMG//A70097_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A70097_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4947624 9.19 % 3939650 7.78 % 42621 8.51 % 21134 4.96 %
Intermediate (0.3-0.7) 10110322 18.77 % 9008299 17.79 % 98164 19.60 % 72612 17.05 %
Methylated (0.7-1) 38796066 72.04 % 37685570 74.43 % 360010 71.89 % 332254 77.99 %
Median Methylation 0.850 0.860 0.850 0.870