{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 143855786, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 108173757, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 75.2, 
            "paired": 143855786, 
            "paired_qc_failed": 0, 
            "read1": 71927893, 
            "read1_qc_failed": 0, 
            "read2": 71927893, 
            "read2_qc_failed": 0, 
            "paired_properly": 106661089, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 74.14, 
            "with_itself": 107145236, 
            "with_itself_qc_failed": 0, 
            "singletons": 1028521, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.71, 
            "diff_chroms": 188279, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 185333438, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 179322251, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.76, 
            "paired": 185333438, 
            "paired_qc_failed": 0, 
            "read1": 92666719, 
            "read1_qc_failed": 0, 
            "read2": 92666719, 
            "read2_qc_failed": 0, 
            "paired_properly": 177236646, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.63, 
            "with_itself": 178226497, 
            "with_itself_qc_failed": 0, 
            "singletons": 1095754, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.59, 
            "diff_chroms": 321793, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 48343557, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 406733, 
            "paired_opt_dupes": 2275, 
            "dupes_pct": 0.008413
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 76478349, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 700148, 
            "paired_opt_dupes": 1938, 
            "dupes_pct": 0.009155
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 48341813, 
            "distinct_read_pairs": 47935094, 
            "one_read_pair": 47531832, 
            "two_read_pair": 399850, 
            "NRF": 0.991587, 
            "PBC1": 0.991587, 
            "PBC2": 118.874158
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 76473537, 
            "distinct_read_pairs": 75773440, 
            "one_read_pair": 75080087, 
            "two_read_pair": 686711, 
            "NRF": 0.990845, 
            "PBC1": 0.99085, 
            "PBC2": 109.332874
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 95873648, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 95873648, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 95873648, 
            "paired_qc_failed": 0, 
            "read1": 47936824, 
            "read1_qc_failed": 0, 
            "read2": 47936824, 
            "read2_qc_failed": 0, 
            "paired_properly": 95873648, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 95873648, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 151556402, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 151556402, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 151556402, 
            "paired_qc_failed": 0, 
            "read1": 75778201, 
            "read1_qc_failed": 0, 
            "read2": 75778201, 
            "read2_qc_failed": 0, 
            "paired_properly": 151556402, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 151556402, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 165753, 
        "Np": 0, 
        "N_opt": 165753, 
        "N_consv": 165753, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 160, 
            "corr_est_frag_len": 0.196819733134541, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2133682, 
            "argmin_corr": 1500, 
            "min_corr": 0.1807198, 
            "NSC": 1.089088, 
            "RSC": 0.4931314
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.452367434598
        }, 
        "rep1-pr1": {
            "FRiP": 0.436374611052
        }, 
        "rep1-pr2": {
            "FRiP": 0.436162011073
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.418739128789
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.184568829321, 
            "auc": 0.49585007776, 
            "ch_div": 0.120282938708, 
            "elbow_pt": 0.0, 
            "jsd": 0.758806347328, 
            "syn_auc": 0.503243839007, 
            "syn_elbow_pt": 0.269176907413, 
            "syn_jsd": 0.443961999383
        }
    ]
}
