/cemt/A56420_3_lane_gembs

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SAMPLE A56420_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 973159684 100.00 % 486579842 100.00 % 486579842 100.00 %
General Reads 946799390 97.29 % 477377573 98.11 % 469421817 96.47 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 13203120 1.36 % 6643833 1.37 % 6559287 1.35 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 13157174 1.35 % 2558436 0.53 % 10598738 2.18 %
Bisulfite_reads C2T 491367799 50.49 % 247654047 50.90 % 243713752 50.09 %
Bisulfite_reads G2A 468634711 48.16 % 236367359 48.58 % 232267352 47.73 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 418625994
Average Unique 86.03 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 57198015379 38.92 % 24638997440 33.53 % 32559017939 44.31 %
Base Counts Overall C 15501029521 10.55 % 605364984 0.82 % 14895664537 20.27 %
Base Counts Overall G 15857782257 10.79 % 14747124067 20.07 % 1110658190 1.51 %
Base Counts Overall T 57402945127 39.06 % 32990310740 44.90 % 24412634387 33.23 %
Base Counts Overall N 987340000 0.67 % 491758911 0.67 % 495581089 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9797376235532943
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 463483864



Mapping Quality

Mapping Quality Histogram
A56420_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A56420_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HGJ2KCCXY_5_1
HKNHLALXX_2_1
H37HNALXX_3_1