/cemt/mapping_coverage/A56420_3_lane_gembs
BACK
SAMPLE A56420_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
878341991 |
100% |
113784544685 |
100% |
| Mapped |
868206718 |
98.85 % |
112264253735 |
98.66 % |
| Passed |
690508618 |
78.62 % |
85609538735 |
75.24 % |
| NotPassed |
177698100 |
20.23 % |
26654715000 |
23.43 % |
| |
|
|
|
|
| LowMAPQ |
97843596 |
11.14 % |
14676539400 |
12.90 % |
| MateUnmapped |
10135273 |
1.15 % |
1520290950 |
1.34 % |
| Duplicate |
68572769 |
7.81 % |
10285915350 |
9.04 % |
| BadOrientation |
72 |
0.00 % |
10800 |
0.00 % |
| LargeInsertSize |
9830 |
0.00 % |
1474500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11271833 |
1.28 % |
1690774950 |
1.49 % |
| Unmapped |
10135273 |
1.15 % |
1520290950 |
1.34 % |
Base Level Counts
| Bases |
# |
% |
| Total |
103567062600 |
100% |
| Passed |
78557783146 |
75.85 % |
| Trimmed |
2861252243 |
2.76 % |
| Clipped |
264447029 |
0.26 % |
| Overlapping |
17693076836 |
17.08 % |
| LowQuality |
4190503346 |
4.05 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |