{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 219785976, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 106786893, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 48.59, 
            "paired": 219785976, 
            "paired_qc_failed": 0, 
            "read1": 109892988, 
            "read1_qc_failed": 0, 
            "read2": 109892988, 
            "read2_qc_failed": 0, 
            "paired_properly": 104199530, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 47.41, 
            "with_itself": 104796917, 
            "with_itself_qc_failed": 0, 
            "singletons": 1989976, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.91, 
            "diff_chroms": 153294, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 199291734, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 192758941, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.72, 
            "paired": 199291734, 
            "paired_qc_failed": 0, 
            "read1": 99645867, 
            "read1_qc_failed": 0, 
            "read2": 99645867, 
            "read2_qc_failed": 0, 
            "paired_properly": 190351557, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.51, 
            "with_itself": 191591556, 
            "with_itself_qc_failed": 0, 
            "singletons": 1167385, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.59, 
            "diff_chroms": 372346, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 45383371, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 890462, 
            "paired_opt_dupes": 1627, 
            "dupes_pct": 0.019621
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 82947353, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 947217, 
            "paired_opt_dupes": 3959, 
            "dupes_pct": 0.011419
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 45373751, 
            "distinct_read_pairs": 44483525, 
            "one_read_pair": 43611169, 
            "two_read_pair": 854900, 
            "NRF": 0.98038, 
            "PBC1": 0.980389, 
            "PBC2": 51.013182
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 82921397, 
            "distinct_read_pairs": 81974628, 
            "one_read_pair": 81039698, 
            "two_read_pair": 923351, 
            "NRF": 0.988582, 
            "PBC1": 0.988595, 
            "PBC2": 87.766947
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 88985818, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 88985818, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 88985818, 
            "paired_qc_failed": 0, 
            "read1": 44492909, 
            "read1_qc_failed": 0, 
            "read2": 44492909, 
            "read2_qc_failed": 0, 
            "paired_properly": 88985818, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 88985818, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 164000272, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 164000272, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 164000272, 
            "paired_qc_failed": 0, 
            "read1": 82000136, 
            "read1_qc_failed": 0, 
            "read2": 82000136, 
            "read2_qc_failed": 0, 
            "paired_properly": 164000272, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 164000272, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 39043, 
        "Np": 0, 
        "N_opt": 39043, 
        "N_consv": 39043, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 155, 
            "corr_est_frag_len": 0.174306229091157, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2244309, 
            "argmin_corr": 1500, 
            "min_corr": 0.1644134, 
            "NSC": 1.060171, 
            "RSC": 0.1648328
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.103196677871
        }, 
        "rep1-pr1": {
            "FRiP": 0.102756512602
        }, 
        "rep1-pr2": {
            "FRiP": 0.102487631151
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.0639679634202
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.281354346613, 
            "auc": 0.4956923948, 
            "ch_div": 0.103638897275, 
            "elbow_pt": 0.0, 
            "jsd": 0.577321318968, 
            "syn_auc": 0.504509362691, 
            "syn_elbow_pt": 0.07341410748, 
            "syn_jsd": 0.281252236015
        }
    ]
}