{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 104968594, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 55383363, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 52.76, 
            "paired": 104968594, 
            "paired_qc_failed": 0, 
            "read1": 52484297, 
            "read1_qc_failed": 0, 
            "read2": 52484297, 
            "read2_qc_failed": 0, 
            "paired_properly": 53911895, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 51.36, 
            "with_itself": 54235195, 
            "with_itself_qc_failed": 0, 
            "singletons": 1148168, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.09, 
            "diff_chroms": 77206, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 199291734, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 192758941, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.72, 
            "paired": 199291734, 
            "paired_qc_failed": 0, 
            "read1": 99645867, 
            "read1_qc_failed": 0, 
            "read2": 99645867, 
            "read2_qc_failed": 0, 
            "paired_properly": 190351557, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.51, 
            "with_itself": 191591556, 
            "with_itself_qc_failed": 0, 
            "singletons": 1167385, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.59, 
            "diff_chroms": 372346, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 23485564, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 330462, 
            "paired_opt_dupes": 1312, 
            "dupes_pct": 0.014071
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 82947353, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 947217, 
            "paired_opt_dupes": 3959, 
            "dupes_pct": 0.011419
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 23480307, 
            "distinct_read_pairs": 23149925, 
            "one_read_pair": 22824209, 
            "two_read_pair": 321132, 
            "NRF": 0.985929, 
            "PBC1": 0.98593, 
            "PBC2": 71.074228
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 82921397, 
            "distinct_read_pairs": 81974628, 
            "one_read_pair": 81039698, 
            "two_read_pair": 923351, 
            "NRF": 0.988582, 
            "PBC1": 0.988595, 
            "PBC2": 87.766947
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 46310204, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 46310204, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 46310204, 
            "paired_qc_failed": 0, 
            "read1": 23155102, 
            "read1_qc_failed": 0, 
            "read2": 23155102, 
            "read2_qc_failed": 0, 
            "paired_properly": 46310204, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 46310204, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 164000272, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 164000272, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 164000272, 
            "paired_qc_failed": 0, 
            "read1": 82000136, 
            "read1_qc_failed": 0, 
            "read2": 82000136, 
            "read2_qc_failed": 0, 
            "paired_properly": 164000272, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 164000272, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 32589, 
        "Np": 0, 
        "N_opt": 32589, 
        "N_consv": 32589, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 140, 
            "corr_est_frag_len": 0.18492540250974, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2320274, 
            "argmin_corr": 1500, 
            "min_corr": 0.1632351, 
            "NSC": 1.132878, 
            "RSC": 0.3153015
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.153519784621
        }, 
        "rep1-pr1": {
            "FRiP": 0.17778022271
        }, 
        "rep1-pr2": {
            "FRiP": 0.178032204339
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.118891853861
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.2426611888, 
            "auc": 0.494029197015, 
            "ch_div": 0.142728903053, 
            "elbow_pt": 1.55572351535e-240, 
            "jsd": 0.615099794274, 
            "syn_auc": 0.50272063209, 
            "syn_elbow_pt": 0.155918592781, 
            "syn_jsd": 0.331522709586
        }
    ]
}
