/cemt/mapping_coverage/A75618_1_lane_gembs
BACK
SAMPLE A75618_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
911155720 |
100% |
119383706710 |
100% |
| Mapped |
904531563 |
99.27 % |
118390083160 |
99.17 % |
| Passed |
704143554 |
77.28 % |
88331881810 |
73.99 % |
| NotPassed |
200388009 |
21.99 % |
30058201350 |
25.18 % |
| |
|
|
|
|
| LowMAPQ |
98449716 |
10.80 % |
14767457400 |
12.37 % |
| MateUnmapped |
6624157 |
0.73 % |
993623550 |
0.83 % |
| Duplicate |
87655081 |
9.62 % |
13148262150 |
11.01 % |
| BadOrientation |
46 |
0.00 % |
6900 |
0.00 % |
| LargeInsertSize |
8364 |
0.00 % |
1254600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
14274802 |
1.57 % |
2141220300 |
1.79 % |
| Unmapped |
6624157 |
0.73 % |
993623550 |
0.83 % |
Base Level Counts
| Bases |
# |
% |
| Total |
105613005150 |
100% |
| Passed |
82259087439 |
77.89 % |
| Trimmed |
2960840891 |
2.80 % |
| Clipped |
326087070 |
0.31 % |
| Overlapping |
16955036270 |
16.05 % |
| LowQuality |
3111953480 |
2.95 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |