/cemt/methylation/A75618_1_lane_gembs

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SAMPLE A75618_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27102884 22576717 83.30 %
NonRefCpG 263984 190402 72.13 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A75618_1_lane_gembs_coverage_refCpG.png ./IMG//A75618_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A75618_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A75618_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A75618_1_lane_gembs_quality_refcpg.png ./IMG//A75618_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A75618_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5271536 9.85 % 3161474 6.62 % 44822 8.93 % 16662 4.10 %
Intermediate (0.3-0.7) 9826689 18.35 % 7967166 16.69 % 95091 18.95 % 63486 15.62 %
Methylated (0.7-1) 38444195 71.80 % 36598068 76.68 % 361875 72.12 % 326331 80.28 %
Median Methylation 0.850 0.860 0.850 0.870