/cemt/mapping_coverage/A75619_1_lane_gembs
BACK
SAMPLE A75619_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
904603909 |
100% |
118244900011 |
100% |
| Mapped |
897391108 |
99.20 % |
117162979861 |
99.09 % |
| Passed |
695863903 |
76.92 % |
86933899111 |
73.52 % |
| NotPassed |
201527205 |
22.28 % |
30229080750 |
25.56 % |
| |
|
|
|
|
| LowMAPQ |
99635010 |
11.01 % |
14945251500 |
12.64 % |
| MateUnmapped |
7212801 |
0.80 % |
1081920150 |
0.91 % |
| Duplicate |
89615325 |
9.91 % |
13442298750 |
11.37 % |
| BadOrientation |
68 |
0.00 % |
10200 |
0.00 % |
| LargeInsertSize |
9394 |
0.00 % |
1409100 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12267408 |
1.36 % |
1840111200 |
1.56 % |
| Unmapped |
7212801 |
0.80 % |
1081920150 |
0.91 % |
Base Level Counts
| Bases |
# |
% |
| Total |
104370495000 |
100% |
| Passed |
80846562864 |
77.46 % |
| Trimmed |
2930857069 |
2.81 % |
| Clipped |
321966375 |
0.31 % |
| Overlapping |
17114629514 |
16.40 % |
| LowQuality |
3156479178 |
3.02 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |