/cemt/methylation/A75619_1_lane_gembs

BACK

SAMPLE A75619_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27027003 21331122 78.93 %
NonRefCpG 267507 182221 68.12 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A75619_1_lane_gembs_coverage_refCpG.png ./IMG//A75619_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A75619_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A75619_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A75619_1_lane_gembs_quality_refcpg.png ./IMG//A75619_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A75619_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5920774 11.12 % 3093978 6.79 % 57389 11.31 % 21804 5.51 %
Intermediate (0.3-0.7) 9991665 18.77 % 7558441 16.59 % 101811 20.06 % 65424 16.52 %
Methylated (0.7-1) 37316860 70.11 % 34902057 76.62 % 348395 68.64 % 308693 77.97 %
Median Methylation 0.840 0.870 0.840 0.870