/CEMT/mapping_coverage/A75620_1_lane_gembs
BACK
SAMPLE A75620_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
900630143 |
100% |
124313652484 |
100% |
| Mapped |
891745193 |
99.01 % |
122980909984 |
98.93 % |
| Passed |
671622952 |
74.57 % |
89962573834 |
72.37 % |
| NotPassed |
220122241 |
24.44 % |
33018336150 |
26.56 % |
| |
|
|
|
|
| LowMAPQ |
99498278 |
11.05 % |
14924741700 |
12.01 % |
| MateUnmapped |
8884950 |
0.99 % |
1332742500 |
1.07 % |
| Duplicate |
107473680 |
11.93 % |
16121052000 |
12.97 % |
| BadOrientation |
52 |
0.00 % |
7800 |
0.00 % |
| LargeInsertSize |
117422 |
0.01 % |
17613300 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13032809 |
1.45 % |
1954921350 |
1.57 % |
| Unmapped |
8884950 |
0.99 % |
1332742500 |
1.07 % |
Base Level Counts
| Bases |
# |
% |
| Total |
100727421450 |
100% |
| Passed |
82948796453 |
82.35 % |
| Trimmed |
2987253656 |
2.97 % |
| Clipped |
346236366 |
0.34 % |
| Overlapping |
10418611250 |
10.34 % |
| LowQuality |
4026523725 |
4.00 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |