/CEMT/methylation/A75620_1_lane_gembs

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SAMPLE A75620_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27162787 20939564 77.09 %
NonRefCpG 279173 180355 64.60 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A75620_1_lane_gembs_coverage_refCpG.png ./IMG//A75620_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A75620_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A75620_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A75620_1_lane_gembs_quality_refcpg.png ./IMG//A75620_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A75620_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6583637 12.31 % 3952536 8.70 % 72570 13.71 % 31058 7.72 %
Intermediate (0.3-0.7) 13046133 24.40 % 10213204 22.48 % 137364 25.96 % 93322 23.20 %
Methylated (0.7-1) 33836550 63.29 % 31259703 68.82 % 319283 60.33 % 277856 69.08 %
Median Methylation 0.800 0.820 0.780 0.820