/cemt/A83590_2_lane_gembs

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SAMPLE A83590_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1086487854 100.00 % 543243927 100.00 % 543243927 100.00 %
General Reads 997874762 91.84 % 502641761 92.53 % 495233001 91.16 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 62792 0.01 % 31570 0.01 % 31222 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 88550300 8.15 % 40570596 7.47 % 47979704 8.83 %
Bisulfite_reads C2T 507930455 46.75 % 255687871 47.07 % 252242584 46.43 %
Bisulfite_reads G2A 490007099 45.10 % 246985460 45.46 % 243021639 44.74 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 424247635
Average Unique 78.10 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 62857996283 38.31 % 29861066768 36.40 % 32996929515 40.23 %
Base Counts Overall C 18581498939 11.33 % 1932917609 2.36 % 16648581330 20.30 %
Base Counts Overall G 18933653421 11.54 % 16805069282 20.49 % 2128584139 2.59 %
Base Counts Overall T 62589159658 38.15 % 32882667327 40.09 % 29706492331 36.21 %
Base Counts Overall N 1097357653 0.67 % 548111991 0.67 % 549245662 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.6598791712566232
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 478120447



Mapping Quality

Mapping Quality Histogram
A83590_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A83590_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HFJCMCCXY_5_1
HGCV2CCXY_5_1