/cemt/A83590_2_lane_gembs/HFJCMCCXY_5_1

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SAMPLE A83590_2_lane_gembs LANE HFJCMCCXY_5_1

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 876462130 100.00 % 438231065 100.00 % 438231065 100.00 %
General Reads 790474268 90.19 % 398090921 90.84 % 392383347 89.54 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 52252 0.01 % 26274 0.01 % 25978 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 85935610 9.80 % 40113870 9.15 % 45821740 10.46 %
Bisulfite_reads C2T 402359924 45.91 % 202516534 46.21 % 199843390 45.60 %
Bisulfite_reads G2A 388166596 44.29 % 195600661 44.63 % 192565935 43.94 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 336470425
Average Unique 76.78 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 50481510173 38.14 % 24011348681 36.29 % 26470161492 40.00 %
Base Counts Overall C 15220931993 11.50 % 1793691874 2.71 % 13427240119 20.29 %
Base Counts Overall G 15547876751 11.75 % 13580154838 20.52 % 1967721913 2.97 %
Base Counts Overall T 50210476615 37.94 % 26345150574 39.81 % 23865326041 36.07 %
Base Counts Overall N 884986098 0.67 % 442544848 0.67 % 442441250 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.6002629995125032
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 378934297



Mapping Quality

Mapping Quality Histogram
HFJCMCCXY_5_1.mapq.png



Read Length

Read Length Reads
150 438231065
150 438231065



Insert Size Plot

Insert Size Histogram
HFJCMCCXY_5_1.isize.png