/cemt/mapping_coverage/A83590_2_lane_gembs
BACK
SAMPLE A83590_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
937429489 |
100% |
124608919140 |
100% |
| Mapped |
927067727 |
98.89 % |
123054654840 |
98.75 % |
| Passed |
731193730 |
78.00 % |
93673555290 |
75.17 % |
| NotPassed |
195873997 |
20.89 % |
29381099550 |
23.58 % |
| |
|
|
|
|
| LowMAPQ |
116019180 |
12.38 % |
17402877000 |
13.97 % |
| MateUnmapped |
10361762 |
1.11 % |
1554264300 |
1.25 % |
| Duplicate |
60494061 |
6.45 % |
9074109150 |
7.28 % |
| BadOrientation |
82 |
0.00 % |
12300 |
0.00 % |
| LargeInsertSize |
30960 |
0.00 % |
4644000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
19329714 |
2.06 % |
2899457100 |
2.33 % |
| Unmapped |
10361762 |
1.11 % |
1554264300 |
1.25 % |
Base Level Counts
| Bases |
# |
% |
| Total |
109669824150 |
100% |
| Passed |
86740765563 |
79.09 % |
| Trimmed |
3165454381 |
2.89 % |
| Clipped |
302539024 |
0.28 % |
| Overlapping |
15693729836 |
14.31 % |
| LowQuality |
3767335346 |
3.44 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |