/cemt/methylation/A83590_2_lane_gembs

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SAMPLE A83590_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26888880 15662741 58.25 %
NonRefCpG 340346 141292 41.51 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A83590_2_lane_gembs_coverage_refCpG.png ./IMG//A83590_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A83590_2_lane_gembs_coverage_nonRefCpG.png ./IMG//A83590_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A83590_2_lane_gembs_quality_refcpg.png ./IMG//A83590_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A83590_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4897152 9.62 % 1227902 3.62 % 127603 20.25 % 24378 7.09 %
Intermediate (0.3-0.7) 11711780 23.01 % 5810206 17.15 % 152336 24.18 % 62117 18.07 %
Methylated (0.7-1) 34283875 67.36 % 26848432 79.23 % 350062 55.57 % 257194 74.83 %
Median Methylation 0.820 0.870 0.750 0.860