/cemt/A83591_2_lane_gembs

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SAMPLE A83591_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1032966164 100.00 % 516483082 100.00 % 516483082 100.00 %
General Reads 934675679 90.48 % 470387903 91.08 % 464287776 89.89 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 126651 0.01 % 63627 0.01 % 63024 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 98163834 9.50 % 46031552 8.91 % 52132282 10.09 %
Bisulfite_reads C2T 475946203 46.08 % 239436180 46.36 % 236510023 45.79 %
Bisulfite_reads G2A 458856127 44.42 % 231015350 44.73 % 227840777 44.11 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 408188027
Average Unique 79.03 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 59609424445 38.22 % 26200560743 33.60 % 33408863702 42.84 %
Base Counts Overall C 17743441777 11.38 % 2042238099 2.62 % 15701203678 20.13 %
Base Counts Overall G 18091146600 11.60 % 15841500957 20.31 % 2249645643 2.88 %
Base Counts Overall T 59486467913 38.14 % 33383213549 42.81 % 26103254364 33.47 %
Base Counts Overall N 1047410029 0.67 % 521432034 0.67 % 525977995 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.7992473814657827
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 452985039



Mapping Quality

Mapping Quality Histogram
A83591_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A83591_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HFJCMCCXY_6_1
HGCV2CCXY_5_1