/cemt/A83591_2_lane_gembs/HFJCMCCXY_6_1

BACK

SAMPLE A83591_2_lane_gembs LANE HFJCMCCXY_6_1

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 886904520 100.00 % 443452260 100.00 % 443452260 100.00 %
General Reads 790321120 89.11 % 397701733 89.68 % 392619387 88.54 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 109251 0.01 % 54887 0.01 % 54364 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 96474149 10.88 % 45695640 10.30 % 50778509 11.45 %
Bisulfite_reads C2T 402420704 45.37 % 202434671 45.65 % 199986033 45.10 %
Bisulfite_reads G2A 388009667 43.75 % 195321949 44.05 % 192687718 43.45 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 345314295
Average Unique 77.87 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 50964851301 38.06 % 22454837910 33.53 % 28510013391 42.58 %
Base Counts Overall C 15440571713 11.53 % 1951146827 2.91 % 13489424886 20.15 %
Base Counts Overall G 15772562922 11.78 % 13628477599 20.35 % 2144085323 3.20 %
Base Counts Overall T 50844856556 37.97 % 28478805040 42.53 % 22366051516 33.40 %
Base Counts Overall N 899740028 0.67 % 448023884 0.67 % 451716144 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.7701483898911174
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 383107549



Mapping Quality

Mapping Quality Histogram
HFJCMCCXY_6_1.mapq.png



Read Length

Read Length Reads
150 443452260
150 443452260



Insert Size Plot

Insert Size Histogram
HFJCMCCXY_6_1.isize.png