/cemt/A83591_2_lane_gembs/HGCV2CCXY_5_1

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SAMPLE A83591_2_lane_gembs LANE HGCV2CCXY_5_1

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 146061644 100.00 % 73030822 100.00 % 73030822 100.00 %
General Reads 144354559 98.83 % 72686170 99.53 % 71668389 98.13 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 17400 0.01 % 8740 0.01 % 8660 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 1689685 1.16 % 335912 0.46 % 1353773 1.85 %
Bisulfite_reads C2T 73525499 50.34 % 37001509 50.67 % 36523990 50.01 %
Bisulfite_reads G2A 70846460 48.50 % 35693401 48.87 % 35153059 48.13 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 62873732
Average Unique 86.09 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 8644573144 39.19 % 3745722833 33.97 % 4898850311 44.42 %
Base Counts Overall C 2302870064 10.44 % 91091272 0.83 % 2211778792 20.06 %
Base Counts Overall G 2318583678 10.51 % 2213023358 20.07 % 105560320 0.96 %
Base Counts Overall T 8641611357 39.18 % 4904408509 44.47 % 3737202848 33.89 %
Base Counts Overall N 147670001 0.67 % 73408150 0.67 % 74261851 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9930916220454744
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 69877490



Mapping Quality

Mapping Quality Histogram
HGCV2CCXY_5_1.mapq.png



Read Length

Read Length Reads
150 73030822
150 73030822



Insert Size Plot

Insert Size Histogram
HGCV2CCXY_5_1.isize.png