/cemt/mapping_coverage/A83591_2_lane_gembs
BACK
SAMPLE A83591_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
885747654 |
100% |
116153218290 |
100% |
| Mapped |
877019537 |
99.01 % |
114844000740 |
98.87 % |
| Passed |
721686851 |
81.48 % |
91544097840 |
78.81 % |
| NotPassed |
155332686 |
17.54 % |
23299902900 |
20.06 % |
| |
|
|
|
|
| LowMAPQ |
94340190 |
10.65 % |
14151028500 |
12.18 % |
| MateUnmapped |
8728117 |
0.99 % |
1309217550 |
1.13 % |
| Duplicate |
48974534 |
5.53 % |
7346180100 |
6.32 % |
| BadOrientation |
50 |
0.00 % |
7500 |
0.00 % |
| LargeInsertSize |
12048 |
0.00 % |
1807200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12005864 |
1.36 % |
1800879600 |
1.55 % |
| Unmapped |
8728117 |
0.99 % |
1309217550 |
1.13 % |
Base Level Counts
| Bases |
# |
% |
| Total |
108245405250 |
100% |
| Passed |
84924174913 |
78.46 % |
| Trimmed |
3106911076 |
2.87 % |
| Clipped |
234464203 |
0.22 % |
| Overlapping |
16466843207 |
15.21 % |
| LowQuality |
3513011851 |
3.25 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |