/cemt/methylation/A83591_2_lane_gembs

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SAMPLE A83591_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27036940 19421232 71.83 %
NonRefCpG 301992 174611 57.82 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A83591_2_lane_gembs_coverage_refCpG.png ./IMG//A83591_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A83591_2_lane_gembs_coverage_nonRefCpG.png ./IMG//A83591_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A83591_2_lane_gembs_quality_refcpg.png ./IMG//A83591_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A83591_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5710616 10.86 % 2309762 5.56 % 88096 15.50 % 26337 6.66 %
Intermediate (0.3-0.7) 10683941 20.33 % 6875587 16.56 % 122555 21.56 % 67074 16.97 %
Methylated (0.7-1) 36170301 68.81 % 32342828 77.88 % 357788 62.94 % 301772 76.36 %
Median Methylation 0.840 0.870 0.810 0.870