{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 137005094, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 128622631, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 93.88, 
            "paired": 137005094, 
            "paired_qc_failed": 0, 
            "read1": 68502547, 
            "read1_qc_failed": 0, 
            "read2": 68502547, 
            "read2_qc_failed": 0, 
            "paired_properly": 125100905, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 91.31, 
            "with_itself": 126691521, 
            "with_itself_qc_failed": 0, 
            "singletons": 1931110, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.41, 
            "diff_chroms": 144558, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 196505800, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 193483777, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.46, 
            "paired": 196505800, 
            "paired_qc_failed": 0, 
            "read1": 98252900, 
            "read1_qc_failed": 0, 
            "read2": 98252900, 
            "read2_qc_failed": 0, 
            "paired_properly": 182597368, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 92.92, 
            "with_itself": 192397682, 
            "with_itself_qc_failed": 0, 
            "singletons": 1086095, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.55, 
            "diff_chroms": 243655, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 42061356, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1304222, 
            "paired_opt_dupes": 4089, 
            "dupes_pct": 0.031008
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 81194162, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 858487, 
            "paired_opt_dupes": 4313, 
            "dupes_pct": 0.010573
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 42058601, 
            "distinct_read_pairs": 40754497, 
            "one_read_pair": 39610340, 
            "two_read_pair": 1089969, 
            "NRF": 0.968993, 
            "PBC1": 0.971926, 
            "PBC2": 36.340795
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 81187704, 
            "distinct_read_pairs": 80329589, 
            "one_read_pair": 79518748, 
            "two_read_pair": 792073, 
            "NRF": 0.98943, 
            "PBC1": 0.989906, 
            "PBC2": 100.393206
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 81514268, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 81514268, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 81514268, 
            "paired_qc_failed": 0, 
            "read1": 40757134, 
            "read1_qc_failed": 0, 
            "read2": 40757134, 
            "read2_qc_failed": 0, 
            "paired_properly": 81514268, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 81514268, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 160671350, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 160671350, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 160671350, 
            "paired_qc_failed": 0, 
            "read1": 80335675, 
            "read1_qc_failed": 0, 
            "read2": 80335675, 
            "read2_qc_failed": 0, 
            "paired_properly": 160671350, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 160671350, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 150742, 
        "Np": 0, 
        "N_opt": 150742, 
        "N_consv": 150742, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": -10, 
            "corr_est_frag_len": 0.200183902107804, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2292712, 
            "argmin_corr": 1500, 
            "min_corr": 0.1837813, 
            "NSC": 1.08925, 
            "RSC": 0.3605761
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.535880751126
        }, 
        "rep1-pr1": {
            "FRiP": 0.49682668156
        }, 
        "rep1-pr2": {
            "FRiP": 0.49671574902
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.488457384508
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.165702980867, 
            "auc": 0.495498582716, 
            "ch_div": 0.162952729774, 
            "elbow_pt": 0.0, 
            "jsd": 0.732260669988, 
            "syn_auc": 0.497433621071, 
            "syn_elbow_pt": 0.328614101496, 
            "syn_jsd": 0.457993608631
        }
    ]
}
