/cemt/A83592_2_lane_gembs

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SAMPLE A83592_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1092586964 100.00 % 546293482 100.00 % 546293482 100.00 %
General Reads 959105220 87.78 % 482352615 88.30 % 476752605 87.27 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4082272 0.37 % 2049859 0.38 % 2032413 0.37 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 129399472 11.84 % 61891008 11.33 % 67508464 12.36 %
Bisulfite_reads C2T 490425001 44.89 % 246541098 45.13 % 243883903 44.64 %
Bisulfite_reads G2A 472762491 43.27 % 237861376 43.54 % 234901115 43.00 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 421665269
Average Unique 77.19 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 62211555867 37.71 % 26829265236 32.52 % 35382290631 42.89 %
Base Counts Overall C 19466049156 11.80 % 2631037854 3.19 % 16835011302 20.41 %
Base Counts Overall G 19634489005 11.90 % 16825653965 20.40 % 2808835040 3.41 %
Base Counts Overall T 62557928757 37.92 % 35652560913 43.22 % 26905367844 32.62 %
Base Counts Overall N 1110608779 0.67 % 551797814 0.67 % 558810965 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9869866005296328
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 467092062



Mapping Quality

Mapping Quality Histogram
A83592_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A83592_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HGCV2CCXY_5_1
HFJM5CCXY_2_1